| Dieckmann lab home | Journal Publications: (note that some links may require subscription to appropriate journals or on-line services) 39. Da Costa JB and Dieckmann T: Entropy and Mg2+ control ligand affinity and specificity in the malachite green binding RNA aptamer. 2011 Molecular BioSystems, 7:2156-2163. (Abstract and full text) 38. Piazza M, Duangkham Y, Spratt DE, Dieckmann T, Guillemette JG: Expression and purification of an isotopically labeled aggregation prone inducible nitric oxide synthase calmodulin-binding protein for use in nuclear magnetic resonance studies. 2011, Journal of Labelled Compounds and Radiopharmaceuticals, 54: 657-663. (Abstract and full text) 37. Dieckmann T and Legault P: Biomolecular NMR Spectroscopy of Ribonucleic Acids. 2008 In: ENCYCLOPEDIA OF LIFE SCIENCES. John Wiley & Sons, Ltd: Chichester. (Abstract and full text) 36. Zumwalt M, Ludwig A, Hagerman PJ, and Dieckmann T: Secondary Structure and Dynamics of the r(CGG) Repeat in the mRNA of the Fragile X Mental Retardation 1 (FMR1) Gene 2007, RNA Biology, 4: 93-100. (Abstract and full text) 35.
34. Flinders J, Dieckmann T: NMR Spectroscopy of Ribonucleic Acids 2006, Progress in NMR Spectroscopy, 48: 137-159. (Abstract and full text) 33. Brackett DM, Dieckmann T: Aptamer to Ribozyme: The intrinsic catalytic potential of a small RNA 2006, ChemBioChem, 7: 839-843. (Abstract and full text) Recommended on Faculty of 1000! 32. Flinders J, Dieckmann T: The Solution Structure of the VS Ribozyme Active Site Loop Reveals a Dynamic 'Hotspot' 2004, J. Mol. Biol. 341: 935-949. (Abstract and full text) 31. Qin PZ, Dieckmann T: Application of NMR and EPR methods to the study of RNA . Current Opinion in Structural Biology 2004, 14: 350-359. (Abstract and full text) 30. Nguyen DH, Dieckmann T, Colvin ME, Fink WH: Dynamics studies of a malachite Green-RNA complex revealing the origin of the red-shift and energetic contributions of stacking interactions. Journal of Physical Chemistry B 2004, 108:1279-1286. (Abstract and full text) 29. Flinders J, DeFina SC, Brackett DM, Baugh C, Wilson C, Dieckmann T: Recognition of planar and nonplanar ligands in the malachite green-RNA aptamer complex. Chembiochem 2004, 5:62-72. (Abstract and full text) 28. Vyas S,
27. DeFina SC, Dieckmann T: Synthesis of selectively 15N or 13C labeled Malachite Green. J. Label Compd Radiopharm 2002, 45:241-248. (Abstract and full text) 26. Nguyen D, DeFina SC, Fink W, Dieckmann T: Binding to an RNA Aptamer Changes the Charge Distribution and Conformation of Malachite Green. J. Am. Chem. Soc. 2002, 124:15081-15084. (Abstract and full text) 25. Zhou XZ, Jin XG, Medhekar R, Chen XY, Dieckmann T, Toney MD: Rapid kinetic and isotopic studies on dialkylglycine decarboxylase. Biochemistry 2001, 40:1367-1377. (Abstract and full text) 24. Bouvet P, Finger DL, Allain FHT, Dieckmann T, Feigon J: Recognition of Pre-formed and Flexible Elements of an RNA Stem-loop by Nucleolin. J. Mol. Biol. 2001, 309:763-775. (Abstract and full text) 23. Flinders J, Dieckmann T: A pH Controlled Conformational Switch In the Cleavage Site of the VS Ribozyme Substrate RNA. J. Mol. Biol. 2001, 308:665-679. (Abstract and full text) 22. Allain FHT, Bouvet P, Dieckmann T, Feigon J: Molecular basis of sequence specific recognition of pre-ribosomal RNA by nucleolin. EMBO J. 2000, 19:6870-6881. (Abstract and full text) 21. Allain FHT, Yen YM, Masse JE, Schultze P, Dieckmann T, Johnson RC, Feigon J: Solution structure of the HMG protein NHP6A and its interaction with DNA reveals the structural determinants for non-sequence-specific binding. EMBO J. 1999, 18:2563-2579. (Abstract and full text) 20. Wall MR, Dieckmann T, Feigon J, Neuhauser D: Two-dimensional filter-diagonalization: spectral inversion of 2D NMR time-correlation signals including degeneracies. Chemical Physics Letters 1998, 291:465-470. 19. Dieckmann T, Withers-Ward ES, Jarosinski MA, Liu CF, Chen ISY, Feigon J: Structure of a human DNA repair protein UBA domain that interacts with HIV-1 Vpr. Nat. Struct. Biol. 1998, 5:1042-1047. 18. Pang JW, Dieckmann T, Feigon J, Neuhauser D: Extraction of Spectral Information from a Short-time Signal using Filter Diagonalization: Recent Developments and Applications to Semiclassical Scattering and NMR Signals. J. Chem. Phys. 1998, 108:8360-8368. 17. Sklenar V, Dieckmann T, Butcher SE, Feigon J: Optimization of Triple-Resonance HCN Experiments for Application to Larger RNA Oligonucleotides. J. Magn. Reson. 1998, 130:119-124. 16. Masse J, Bortmann P, Dieckmann T, Feigon J: Simple Efficient Protocol for Enzymatic Synthesis of Uniformly 13C and 15N Labeled DNA for Heteronuclear NMR Studies. Nucleic Acids Res. 1998, 26:2618-2624. 15. Butcher SE, Dieckmann T, Feigon J: Solution structure of a GAAA tetraloop receptor RNA. EMBO J. 1997, 16:7490-7499. 14. Butcher SE, Dieckmann T, Feigon J: Solution structure of the conserved 16S-like ribosomal RNA UGAA tetraloop. J. Mol. Biol. 1997, 268:348-358. 13. Dieckmann T, Butcher SE, Sassanfar M, Szostak JW, Feigon J: Mutant ATP-binding RNA aptamers reveal the structural basis for ligand binding. J. Mol. Biol. 1997, 273:467-478. 12. Dieckmann T, Feigon J: Assignment methodology for larger oligonucleotides: application to an ATP-binding RNA aptamer. J. Biomol. NMR 1997, 9:259-272. 11. Feigon J, Dieckmann T, Smith FW: Aptamer Structures From a to Zeta. Chem. Biol. 1996, 3:611-617. 10. Fahrner RL, Dieckmann T, Harwig SSL, Lehrer RL, Eisenberg DS, Feigon J: Solution structure of protegrin-1, a broad-spectrum antimicrobial peptide from porcine leukocytes. Chem. & Biol. 1996, 3:543-550. 9. Dieckmann T, Suzuki E, Nakamura GK, Feigon J: Solution structure of an ATP-binding RNA aptamer reveals a novel fold. RNA 1996, 2:628-640. 8. Sklenar V, Dieckmann T, Butcher SE, Feigon J: Through-bond correlation of imino and aromatic resonances in 13C,15N-labeled RNA via heteronuclear TOCSY. J. Biomol. NMR 1996, 7:83-87. 7. Mueller T, Dieckmann T, Sebald W, Oschkinat H: Aspects of receptor binding and signalling of interleukin-4 investigated by site-directed mutagenesis and NMR spectroscopy. J. Mol. Biol. 1994, 237:423-436. 6. Dieckmann T, Feigon J: Heteronuclear techniques in NMR studies of RNA and DNA. Curr. Opin. Struct. Biol. 1994, 4:745-749. 5. Oschkinat H, Muller T, Dieckmann T: Protein structure determination with three and four dimensional NMR spectroscopy. Angew. Chem. Internatl. Ed. Engl. 1994, 33:277-293. 4. Engh RA, Dieckmann T, Bode W, Auerswald EA, Turk V, Huber R, Oschkinat H: Conformational Variability of Chicken Cystatin - Comparison of Structures Determined By X-Ray Diffraction and Nmr Spectroscopy. J. Mol. Biol. 1993, 234:1060-1069. 3. Dieckmann T, Mitschang L, Hofmann M,
2. Odefey C, Westendorf J, Dieckmann T, Oschkinat H: 2-Dimensional Nuclear Magnetic Resonance Studies of an Intercalation Complex Between the Novel Semisynthetic Anthracycline 3'-Deamino-3'-(2-Methoxy-4-Morpholinyl)-Doxorubicin and the Hexanucleotide Duplex D(Cgtacg). Chemico-Biological Interactions 1992, 85:117-126. 1. Klaus W, Dieckmann T, Wray V, Schomburg D, Wingender E, Mayer H: Investigation of the Solution Structure of the Human Parathyroid Hormone Fragment (1-34) By H-1 Nmr Spectroscopy, Distance Geometry, and Molecular Dynamics Calculations. Biochemistry 1991, 30:6936-6942. |
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Thorsten Dieckmann < tdieckma@uwaterloo.ca> revised: December 1, 2011 |