Dieckmann lab home Journal Publications:
(note that some links may require subscription to appropriate journals or on-line services)

46. Piazza M, Guillemette JG, and Dieckmann T: Chemical shift assignments of calmodulin constructs with EF hand mutations. 2016, J. Biomol. NMR Assign. (Abstract and full text)

45. Piazza M, Guillemette JG, and Dieckmann T: Dynamics of nitric oxide synthase-calmodulin interactions at physiological calcium concentrations. 2015, Biochemistry, 54:1989-2000. (Abstract and full text)

44. Piazza M, Guillemette JG, and Dieckmann T: Chemical Shift perturbations induced by residue specific mutations of CaM interacting with NOS peptides. 2015, J. Biomol. NMR Assign., 9:299-301. (Abstract and full text)

43. Piazza M, Taiakina V, Guillemette SR, Guillemette JG, and Dieckmann T: Solution Structure of Calmodulin bound to the target peptide of Endothelial Nitric Oxide Synthase phosphorylated at Thr495. 2014, Biochemistry, 53:1241-1249. (Abstract and full text)

42. Da Costa JB, Andreiev AI, and Dieckmann T: Thermodynamics and Kinetics of Adaptive Binding in the Malachite Green RNA Aptamer. 2013, Biochemistry, 52:6575-6583. (Abstract and full text)

41. Da Costa JB and Dieckmann T: Structure and Thermodynamics of Drug-RNA Aptamer Interactions. 2013, Mini-Rev Med Chem, 13:467-477. (Abstract and full text)

40. Piazza M, Futrega K, Spratt DE, Dieckmann T, and Guillemette JG: Structure and dynamics of calmodulin (CaM) bound to nitric oxide synthase peptides: Effects of a phosphomimetic CaM mutation. 2012, Biochemistry, 5:3651-3661. (Abstract and full text)

39. Da Costa JB and Dieckmann T: Entropy and Mg2+ control ligand affinity and specificity in the malachite green binding RNA aptamer. 2011 Molecular BioSystems, 7:2156-2163. (Abstract and full text)

38. Piazza M, Duangkham Y, Spratt DE, Dieckmann T, Guillemette JG: Expression and purification of an isotopically labeled aggregation prone inducible nitric oxide synthase calmodulin-binding protein for use in nuclear magnetic resonance studies. 2011, Journal of Labelled Compounds and Radiopharmaceuticals, 54: 657-663. (Abstract and full text)

37. Dieckmann T and Legault P: Biomolecular NMR Spectroscopy of Ribonucleic Acids. 2008 In: ENCYCLOPEDIA OF LIFE SCIENCES. John Wiley & Sons, Ltd: Chichester. (Abstract and full text)

36. Zumwalt M, Ludwig A, Hagerman PJ, and Dieckmann T: Secondary Structure and Dynamics of the r(CGG) Repeat in the mRNA of the Fragile X Mental Retardation 1 (FMR1) Gene 2007, RNA Biology, 4: 93-100. (Abstract and full text)

35. Moore NW, Delacruz ARC , Lancaster KS , Dieckmann T and Kuhl TL: Synthesis of a Reversible Streptavidin Binder for Biomimetic Assemblies 2007, Australian Journal of Chemistry, 60: 363–368. (Abstract and full text)

34. Flinders J, Dieckmann T: NMR Spectroscopy of Ribonucleic Acids 2006, Progress in NMR Spectroscopy, 48: 137-159. (Abstract and full text)

33. Brackett DM, Dieckmann T: Aptamer to Ribozyme: The intrinsic catalytic potential of a small RNA 2006, ChemBioChem, 7: 839-843. (Abstract and full text) Recommended on Faculty of 1000!

32. Flinders J, Dieckmann T: The Solution Structure of the VS Ribozyme Active Site Loop Reveals a Dynamic 'Hotspot' 2004, J. Mol. Biol. 341: 935-949. (Abstract and full text)

31. Qin PZ, Dieckmann T: Application of NMR and EPR methods to the study of RNA . Current Opinion in Structural Biology 2004, 14: 350-359. (Abstract and full text)

30. Nguyen DH, Dieckmann T, Colvin ME, Fink WH: Dynamics studies of a malachite Green-RNA complex revealing the origin of the red-shift and energetic contributions of stacking interactions. Journal of Physical Chemistry B 2004, 108:1279-1286. (Abstract and full text)

29. Flinders J, DeFina SC, Brackett DM, Baugh C, Wilson C, Dieckmann T: Recognition of planar and nonplanar ligands in the malachite green-RNA aptamer complex. Chembiochem 2004, 5:62-72. (Abstract and full text)

28. Vyas S, Weekley AJ , Tenn BK, Flinders JC, Dieckmann T, Augustine MP: Using sodium cation organization to study the phase behavior of bicelle solutions. Journal of Physical Chemistry B 2003, 107:10956-10961. (Abstract and full text)

27. DeFina SC, Dieckmann T: Synthesis of selectively 15N or 13C labeled Malachite Green. J. Label Compd Radiopharm 2002, 45:241-248. (Abstract and full text)

26. Nguyen D, DeFina SC, Fink W, Dieckmann T: Binding to an RNA Aptamer Changes the Charge Distribution and Conformation of Malachite Green. J. Am. Chem. Soc. 2002, 124:15081-15084. (Abstract and full text)

25. Zhou XZ, Jin XG, Medhekar R, Chen XY, Dieckmann T, Toney MD: Rapid kinetic and isotopic studies on dialkylglycine decarboxylase. Biochemistry 2001, 40:1367-1377. (Abstract and full text)

24. Bouvet P, Finger DL, Allain FHT, Dieckmann T, Feigon J: Recognition of Pre-formed and Flexible Elements of an RNA Stem-loop by Nucleolin. J. Mol. Biol. 2001, 309:763-775. (Abstract and full text)

23. Flinders J, Dieckmann T: A pH Controlled Conformational Switch In the Cleavage Site of the VS Ribozyme Substrate RNA. J. Mol. Biol. 2001, 308:665-679. (Abstract and full text)

22. Allain FHT, Bouvet P, Dieckmann T, Feigon J: Molecular basis of sequence specific recognition of pre-ribosomal RNA by nucleolin. EMBO J. 2000, 19:6870-6881. (Abstract and full text)

21. Allain FHT, Yen YM, Masse JE, Schultze P, Dieckmann T, Johnson RC, Feigon J: Solution structure of the HMG protein NHP6A and its interaction with DNA reveals the structural determinants for non-sequence-specific binding. EMBO J. 1999, 18:2563-2579. (Abstract and full text)

20. Wall MR, Dieckmann T, Feigon J, Neuhauser D: Two-dimensional filter-diagonalization: spectral inversion of 2D NMR time-correlation signals including degeneracies. Chemical Physics Letters 1998, 291:465-470.

19. Dieckmann T, Withers-Ward ES, Jarosinski MA, Liu CF, Chen ISY, Feigon J: Structure of a human DNA repair protein UBA domain that interacts with HIV-1 Vpr. Nat. Struct. Biol. 1998, 5:1042-1047.

18. Pang JW, Dieckmann T, Feigon J, Neuhauser D: Extraction of Spectral Information from a Short-time Signal using Filter Diagonalization: Recent Developments and Applications to Semiclassical Scattering and NMR Signals. J. Chem. Phys. 1998, 108:8360-8368.

17. Sklenar V, Dieckmann T, Butcher SE, Feigon J: Optimization of Triple-Resonance HCN Experiments for Application to Larger RNA Oligonucleotides. J. Magn. Reson. 1998, 130:119-124.

16. Masse J, Bortmann P, Dieckmann T, Feigon J: Simple Efficient Protocol for Enzymatic Synthesis of Uniformly 13C and 15N Labeled DNA for Heteronuclear NMR Studies. Nucleic Acids Res. 1998, 26:2618-2624.

15. Butcher SE, Dieckmann T, Feigon J: Solution structure of a GAAA tetraloop receptor RNA. EMBO J. 1997, 16:7490-7499.

14. Butcher SE, Dieckmann T, Feigon J: Solution structure of the conserved 16S-like ribosomal RNA UGAA tetraloop. J. Mol. Biol. 1997, 268:348-358.

13. Dieckmann T, Butcher SE, Sassanfar M, Szostak JW, Feigon J: Mutant ATP-binding RNA aptamers reveal the structural basis for ligand binding. J. Mol. Biol. 1997, 273:467-478.

12. Dieckmann T, Feigon J: Assignment methodology for larger oligonucleotides: application to an ATP-binding RNA aptamer. J. Biomol. NMR 1997, 9:259-272.

11. Feigon J, Dieckmann T, Smith FW: Aptamer Structures From a to Zeta. Chem. Biol. 1996, 3:611-617.

10. Fahrner RL, Dieckmann T, Harwig SSL, Lehrer RL, Eisenberg DS, Feigon J: Solution structure of protegrin-1, a broad-spectrum antimicrobial peptide from porcine leukocytes. Chem. & Biol. 1996, 3:543-550.

9. Dieckmann T, Suzuki E, Nakamura GK, Feigon J: Solution structure of an ATP-binding RNA aptamer reveals a novel fold. RNA 1996, 2:628-640.

8. Sklenar V, Dieckmann T, Butcher SE, Feigon J: Through-bond correlation of imino and aromatic resonances in 13C,15N-labeled RNA via heteronuclear TOCSY. J. Biomol. NMR 1996, 7:83-87.

7. Mueller T, Dieckmann T, Sebald W, Oschkinat H: Aspects of receptor binding and signalling of interleukin-4 investigated by site-directed mutagenesis and NMR spectroscopy. J. Mol. Biol. 1994, 237:423-436.

6. Dieckmann T, Feigon J: Heteronuclear techniques in NMR studies of RNA and DNA. Curr. Opin. Struct. Biol. 1994, 4:745-749.

5. Oschkinat H, Muller T, Dieckmann T: Protein structure determination with three and four dimensional NMR spectroscopy. Angew. Chem. Internatl. Ed. Engl. 1994, 33:277-293.

4. Engh RA, Dieckmann T, Bode W, Auerswald EA, Turk V, Huber R, Oschkinat H: Conformational Variability of Chicken Cystatin - Comparison of Structures Determined By X-Ray Diffraction and Nmr Spectroscopy. J. Mol. Biol. 1993, 234:1060-1069.

3. Dieckmann T, Mitschang L, Hofmann M, Kos J, Turk V, Auerswald EA, Jaenicke R, Oschkinat H: The Structures of Native Phosphorylated Chicken Cystatin and of a Recombinant Unphosphorylated Variant in Solution. J. Mol. Biol. 1993, 234:1048-1059.

2. Odefey C, Westendorf J, Dieckmann T, Oschkinat H: 2-Dimensional Nuclear Magnetic Resonance Studies of an Intercalation Complex Between the Novel Semisynthetic Anthracycline 3'-Deamino-3'-(2-Methoxy-4-Morpholinyl)-Doxorubicin and the Hexanucleotide Duplex D(Cgtacg). Chemico-Biological Interactions 1992, 85:117-126.

1. Klaus W, Dieckmann T, Wray V, Schomburg D, Wingender E, Mayer H: Investigation of the Solution Structure of the Human Parathyroid Hormone Fragment (1-34) By H-1 Nmr Spectroscopy, Distance Geometry, and Molecular Dynamics Calculations. Biochemistry 1991, 30:6936-6942.



Thorsten Dieckmann < tdieckma@uwaterloo.ca> revised: February 6, 2014